STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6816KEGG: sgr:SGR_2124 ArsR family transcriptional regulator. (326 aa)    
Predicted Functional Partners:
Caci_6815
KEGG: sma:SAV_5987 hypothetical protein.
 
     0.599
Caci_6814
PFAM: glycosidase PH1107-related; KEGG: tte:TTE0063 glycosylase.
       0.477
Caci_4402
PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein.
  
     0.471
Caci_7704
PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein.
  
     0.448
Caci_8436
PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_0078 major facilitator transporter.
 
     0.438
Caci_8046
KEGG: stp:Strop_1263 hypothetical protein.
  
     0.435
Caci_5348
SMART: von Willebrand factor type A; KEGG: tfu:Tfu_2266 von Willebrand factor, type A.
  
     0.434
Caci_4775
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: stp:Strop_3594 von Willebrand factor, type A.
  
     0.425
Caci_0978
KEGG: saq:Sare_4167 hypothetical protein.
  
     0.412
Caci_5792
Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
  
     0.411
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.