STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6848KEGG: fra:Francci3_1692 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Caci_0100
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: aau:AAur_0053 UreA carboxylase/allophanate hydrolase domain-containing protein.
  
    0.853
Caci_6849
KEGG: fre:Franean1_2744 type IV secretory pathway VirB4 protein-like protein.
 
  
 0.849
Caci_6847
KEGG: fre:Franean1_2742 hypothetical protein.
       0.793
Caci_6850
KEGG: fre:Franean1_6729 type IV secretory pathway VirD4 protein-like protein.
  
    0.761
Caci_6851
KEGG: fre:Franean1_6730 hypothetical protein.
       0.746
Caci_6846
KEGG: fre:Franean1_6725 hypothetical protein.
       0.559
Caci_3728
KEGG: cmi:CMM_0120 putative UreA amidolyase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl- phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
    0.443
Caci_4080
KEGG: fre:Franean1_2548 type IV secretory pathway VirB4 protein-like protein.
 
  
 0.430
Caci_6845
KEGG: fra:Francci3_1689 hypothetical protein.
       0.429
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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