STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6898KEGG: fra:Francci3_1740 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Caci_6897
Hypothetical protein; KEGG: fra:Francci3_1739 putative ATP/GTP-binding protein.
       0.786
Caci_6892
KEGG: fra:Francci3_1734 type II secretion system protein.
       0.636
Caci_6893
KEGG: fra:Francci3_1735 putative integral membrane protein.
       0.631
Caci_6896
PFAM: SAF domain protein; KEGG: fre:Franean1_2596 SAF domain-containing protein.
       0.624
Caci_6894
PFAM: type II secretion system protein E; KEGG: fre:Franean1_2594 type II secretion system protein E.
       0.613
Caci_6895
KEGG: fre:Franean1_2595 hypothetical protein.
       0.601
Caci_6891
Hypothetical protein.
       0.451
Caci_6889
PFAM: TadE family protein; KEGG: fra:Francci3_1732 TadE-like.
       0.417
Caci_6888
KEGG: fre:Franean1_2588 hypothetical protein.
       0.412
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.