STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6930PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ana:alr1976 transcriptional regulator. (160 aa)    
Predicted Functional Partners:
Caci_6931
PFAM: protein of unknown function DUF955; KEGG: bvi:Bcep1808_0173 hypothetical protein.
  
  
 0.816
Caci_6925
KEGG: lsp:Bsph_p024 hypothetical protein.
       0.491
Caci_6926
PFAM: DNA polymerase beta domain protein region; KEGG: pla:Plav_1829 hypothetical protein.
       0.491
Caci_6927
KEGG: rpe:RPE_2467 hypothetical protein.
       0.491
Caci_6928
KEGG: pla:Plav_1827 hypothetical protein.
       0.491
Caci_6929
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_5158 AAA ATPase, central region; Belongs to the AAA ATPase family.
       0.491
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.