STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6971PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_1243 extracellular solute-binding protein. (431 aa)    
Predicted Functional Partners:
Caci_6969
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component.
 
 
 0.926
Caci_6970
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component.
 
   0.922
Caci_2785
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component.
 
 
 0.833
Caci_2784
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component.
 
   0.826
Caci_4419
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7408 solute-binding lipoprotein.
  
   
 0.628
Caci_4683
PFAM: glycoside hydrolase family 31; KEGG: hau:Haur_1246 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.537
Caci_4417
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7410 binding-protein dependent transport protein.
 
   0.535
Caci_5099
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1326 solute-binding lipoprotein.
  
   
 0.527
Caci_4418
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1029 ABC transporter permease protein.
 
 
 0.498
Caci_4934
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sco:SCO5692 transcriptional regulator.
  
     0.497
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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