STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7016PFAM: DoxX family protein; KEGG: sma:SAV_5824 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
     
 0.653
Caci_7017
KEGG: sco:SCO0846 hypothetical protein.
       0.445
Caci_7013
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; 3- hydroxyacyl-CoA dehydrogenase domain protein; KEGG: hau:Haur_3968 3-hydroxybutyryl-CoA dehydrogenase.
  
    0.410
Caci_7014
TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA4297 AMP-generating CoA ligase.
  
    0.409
Caci_7015
PFAM: phosphopantetheine-binding; KEGG: stp:Strop_0682 phosphopantetheine-binding.
       0.400
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.