STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7040KEGG: sma:SAV_5602 hypothetical protein. (402 aa)    
Predicted Functional Partners:
Caci_1562
KEGG: sco:SCO2365 hypothetical protein.
 
  
 0.855
Caci_7398
Formate dehydrogenase gamma subunit; KEGG: sma:SAV_6625 hypothetical protein.
  
     0.689
Caci_8546
KEGG: cdf:CD0439 hypothetical protein.
 
  
 0.678
Caci_0423
KEGG: sma:SAV_6625 hypothetical protein.
  
     0.668
Caci_4586
KEGG: sgr:SGR_6765 hypothetical protein.
  
     0.668
Caci_0078
PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_3762 hypothetical protein.
  
     0.624
Caci_2550
PFAM: protein of unknown function DUF939; KEGG: sma:SAV_7431 integral membrane protein.
  
     0.621
Caci_7027
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone.
  
     0.620
Caci_8297
KEGG: sgr:SGR_3917 hypothetical protein.
  
     0.608
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.593
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.