STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7075KEGG: stp:Strop_3708 TPR repeat-containing protein. (609 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.603
Caci_7074
TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein; KEGG: sco:SCO4047 hypothetical protein.
       0.572
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.509
Caci_7078
KEGG: fal:FRAAL1997 putative DNA-binding protein.
     
 0.502
Caci_7077
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
       0.490
Caci_7076
PFAM: beta-lactamase domain protein; KEGG: sgr:SGR_4977 putative integral membrane protein.
       0.486
Caci_1295
KEGG: scl:sce3123 protein kinase; Belongs to the WXG100 family.
    
 0.473
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.464
Caci_0267
PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2672 HSP90 family protein.
  
 0.453
Caci_0695
PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2672 HSP90 family protein.
  
 0.453
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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