STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7111PFAM: nitroreductase; KEGG: saq:Sare_0515 nitroreductase. (204 aa)    
Predicted Functional Partners:
Caci_7110
KEGG: saq:Sare_1784 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
       0.773
Caci_5113
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro02544 hypothetical protein.
 
    0.607
Caci_7112
PFAM: inositol monophosphatase; KEGG: sgr:SGR_1204 putative inositol monophosphatase.
  
    0.599
Caci_6141
PFAM: protein of unknown function RIO1; SMART: protein of unknown function RIO1; KEGG: saq:Sare_3291 protein of unknown function RIO1.
  
     0.542
Caci_7108
KEGG: sco:SCO2204 hypothetical protein.
       0.540
Caci_7109
KEGG: kra:Krad_3966 hypothetical protein.
       0.540
Caci_4793
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO1669 ATP/GTP-binding protein.
 
  
 0.504
Caci_7344
PFAM: ABC-2 type transporter; KEGG: stp:Strop_3623 ABC-2 type transporter.
 
    0.495
Caci_7611
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sgr:SGR_4501 hypothetical protein.
 
  
 0.491
Caci_6491
KEGG: saq:Sare_2317 luciferase family protein.
 
  
 0.469
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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