STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7117PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter. (432 aa)    
Predicted Functional Partners:
Caci_7118
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: stp:Strop_1822 regulatory protein, ArsR.
 
     0.848
Caci_6215
PFAM: major facilitator superfamily MFS_1; KEGG: ppd:Ppro_2206 major facilitator transporter.
  
     0.770
Caci_8128
PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0365 major facilitator transporter.
  
     0.770
Caci_0689
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: fre:Franean1_1259 major facilitator transporter.
  
     0.765
Caci_2754
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sma:SAV_3894 integral membrane efflux protein.
  
     0.760
Caci_0805
PFAM: major facilitator superfamily MFS_1; Protein of unknown function DUF895, eukaryotic; KEGG: yen:YE2035 putative membrane transport protein.
  
     0.758
Caci_3450
PFAM: major facilitator superfamily MFS_1; KEGG: ava:Ava_C0001 major facilitator transporter.
  
     0.751
Caci_5551
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3045 major facilitator superfamily permease.
  
     0.745
Caci_1693
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5246 major facilitator superfamily permease.
  
     0.740
Caci_4356
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: kra:Krad_2356 major facilitator transporter.
  
     0.738
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.