STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7131KEGG: sco:SCO7121 secreted protein. (283 aa)    
Predicted Functional Partners:
Caci_7132
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_1523 lyase.
 
    0.791
Caci_4231
PFAM: alpha/beta hydrolase fold protein; KEGG: cti:RALTA_A1627 putative epoxide hydrolase.
  
     0.672
Caci_1437
PFAM: alpha/beta hydrolase fold protein; KEGG: bph:Bphy_3921 alpha/beta hydrolase fold protein protein.
  
     0.587
Caci_7130
PFAM: Tannase and feruloyl esterase; KEGG: hypothetical protein.
 
     0.569
Caci_5142
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator.
 
     0.563
Caci_3624
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: kra:Krad_2729 regulatory protein LuxR.
 
     0.552
Caci_4229
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator.
 
     0.522
Caci_7128
KEGG: nfa:nfa32200 hypothetical protein.
 
     0.520
Caci_7133
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sma:SAV_667 oxidoreductase.
 
     0.512
Caci_7134
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sco:SCO0512 regulatory protein.
 
     0.504
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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