STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7152PFAM: Peptidase M9A collagenase domain protein; PKD domain containing protein; Peptidase M9 domain; peptidase domain protein; SMART: PKD domain containing protein; KEGG: sco:SCO5912 secreted protease. (855 aa)    
Predicted Functional Partners:
Caci_5189
PFAM: DSBA oxidoreductase; KEGG: saq:Sare_0436 tetratricopeptide domain- containing protein.
 
    0.647
Caci_6319
PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_1045 FAD dependent oxidoreductase.
  
     0.594
Caci_5985
KEGG: sen:SACE_1301 hypothetical protein.
  
     0.577
Caci_7496
PFAM: glycoside hydrolase family 8; KEGG: hau:Haur_2431 licheninase.
  
   
 0.577
Caci_5475
KEGG: pol:Bpro_0146 hypothetical protein.
  
     0.567
Caci_0628
KEGG: hypothetical protein.
 
    0.553
Caci_7153
Hypothetical protein.
       0.506
Caci_7149
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_3152 ABC transporter integral membrane protein BldKC.
       0.504
Caci_7150
KEGG: sma:SAV_3153 ABC transporter intracellular ATPase BldKD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.504
Caci_7151
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sma:SAV_3154 ABC transporter ATP-binding protein BldKE; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.504
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.