STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7189PFAM: lipolytic protein G-D-S-L family; Fibronectin type III domain protein; KEGG: tfu:Tfu_2470 fibronectin, type III. (343 aa)    
Predicted Functional Partners:
Caci_3580
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: sgr:SGR_385 hypothetical protein.
  
     0.700
Caci_7188
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tfu:Tfu_3055 anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
       0.601
Caci_0474
PFAM: glycoside hydrolase family 11; Ig family protein; cellulose-binding family II; SMART: cellulose-binding family II; Dystroglycan- type cadherin domain protein; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   0.586
Caci_4884
PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase.
  
   
 0.562
Caci_0434
KEGG: fra:Francci3_0876 putative ATP/GTP binding protein.
 
     0.561
Caci_0462
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.556
Caci_0441
Hypothetical protein; KEGG: sma:SAV_5712 ATP/GTP-binding protein.
  
     0.551
Caci_5224
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein.
 
     0.520
Caci_7187
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sma:SAV_3012 anti-sigma factor.
 
     0.508
Caci_2729
PFAM: Alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase.
 
   0.502
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.