STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7205PFAM: regulatory protein TetR; KEGG: sgr:SGR_6542 TetR family transcriptional regulator. (188 aa)    
Predicted Functional Partners:
Caci_7206
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bmc:BAbS19_II07150 cupin domain protein.
 
     0.706
Caci_3566
PFAM: regulatory protein TetR; KEGG: fal:FRAAL1635 TetR family transcriptional regulator.
  
     0.654
Caci_3441
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sme:SMc03253 putative L-proline 3-hydroxylase protein.
  
     0.524
Caci_1118
KEGG: sgr:SGR_3048 hypothetical protein.
  
     0.520
Caci_4649
PFAM: regulatory protein TetR; KEGG: aau:AAur_1120 TetR family transcriptional regulator.
  
     0.520
Caci_7204
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: cmi:CMM_0710 hypothetical protein.
  
    0.500
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.