STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7206PFAM: Cupin 2 conserved barrel domain protein; KEGG: bmc:BAbS19_II07150 cupin domain protein. (260 aa)    
Predicted Functional Partners:
Caci_2396
PFAM: Carboxymuconolactone decarboxylase; KEGG: cef:CE1088 hypothetical protein.
 
   
 0.746
Caci_7205
PFAM: regulatory protein TetR; KEGG: sgr:SGR_6542 TetR family transcriptional regulator.
 
     0.706
Caci_7471
PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_1856 carboxymuconolactone decarboxylase.
 
   
 0.631
Caci_2695
KEGG: sus:Acid_3303 hypothetical protein.
 
     0.554
Caci_8676
KEGG: rca:Rcas_1050 hypothetical protein.
 
     0.501
Caci_1971
KEGG: cvi:CV_2849 hypothetical protein.
 
    0.496
Caci_7204
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: cmi:CMM_0710 hypothetical protein.
       0.432
Caci_1573
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_6561 acetyltransferase.
 
     0.416
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.