STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7275PFAM: putative cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like. (624 aa)    
Predicted Functional Partners:
Caci_7276
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transport protein BenE.
       0.522
Caci_1420
KEGG: sen:SACE_7298 hypothetical protein.
  
 
 0.481
Caci_6944
Hypothetical protein; KEGG: saq:Sare_1994 OmpA/MotB domain-containing protein.
  
 
 0.481
Caci_7772
KEGG: sgr:SGR_853 putative integral membrane protein.
  
 
 0.481
Caci_7643
Hypothetical protein; KEGG: saq:Sare_1685 glycosyl transferase group 1.
  
     0.464
Caci_7274
KEGG: sma:SAV_5464 hypothetical protein.
       0.456
Caci_5440
KEGG: ace:Acel_1251 TPR repeat-containing protein.
  
  
 0.448
Caci_8727
PFAM: PKD domain containing protein; putative cell wall binding repeat 2-containing protein; KEGG: ace:Acel_1679 protease-like.
  
   
0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.