STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7417PFAM: Abortive infection protein; KEGG: stp:Strop_2460 abortive infection protein. (296 aa)    
Predicted Functional Partners:
Caci_7416
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: saq:Sare_4861 histidine kinase.
 
     0.813
Caci_7415
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: kra:Krad_4217 two component LuxR family transcriptional regulator.
 
     0.659
Caci_7418
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fra:Francci3_0359 serine/threonine protein kinase.
       0.468
Caci_7170
FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits; PFAM: ABC transporter related; ABC-2 type transporter; Forkhead-associated protein; SMART: AAA ATPase; Forkhead-associated protein; KEGG: sma:SAV_1159 ABC transporter ATP-binding protein.
  
  
 0.433
Caci_7414
PFAM: LmbE family protein; KEGG: sco:SCO7632 hypothetical protein.
       0.432
Caci_3689
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4409 hypothetical protein.
  
  
 0.425
Caci_3690
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein.
  
  
 0.425
Caci_3696
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein.
  
  
 0.425
Caci_4201
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein.
  
  
 0.425
Caci_4207
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein.
  
  
 0.425
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.