STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7432Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sco:SCO5956 regulatory protein. (216 aa)    
Predicted Functional Partners:
Caci_3120
PFAM: protein of unknown function DUF35; KEGG: mgi:Mflv_3567 hypothetical protein.
  
     0.534
Caci_7431
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5957 transport protein.
       0.486
Caci_4186
PFAM: major facilitator superfamily MFS_1; KEGG: rsa:RSal33209_0919 MFS transporter.
  
     0.463
Caci_2645
PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase; Belongs to the glycosyl hydrolase 18 family.
  
     0.434
Caci_8493
PFAM: regulatory protein TetR; KEGG: sgr:SGR_5970 TetR family transcriptional regulator.
  
     0.431
Caci_7475
KEGG: sma:SAV_696 hypothetical protein.
  
     0.420
Caci_4187
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sgr:SGR_4106 ArsR family transcriptional regulator.
  
     0.401
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.