STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7476PFAM: Limonene-12-epoxide hydrolase; KEGG: bsu:BSU06870 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Caci_3610
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_0072 LuxR family transcriptional regulator.
  
    0.740
Caci_4926
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
     0.719
Caci_5132
PFAM: regulatory protein TetR; KEGG: mva:Mvan_4572 TetR family transcriptional regulator.
  
     0.691
Caci_4108
Cytochrome P450-like protein; KEGG: Hypothetical protein CBG18987.
  
    0.671
Caci_4288
PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: sco:SCO5786 secreted hydrolase.
  
     0.574
Caci_4106
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: amr:AM1_1657 hypothetical protein.
  
    0.563
Caci_4285
PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: ace:Acel_0618 cellulose-binding family II protein.
  
     0.561
Caci_7475
KEGG: sma:SAV_696 hypothetical protein.
       0.547
Caci_5501
KEGG: rha:RHA1_ro00874 hypothetical protein.
  
     0.546
Caci_0393
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_2836 Aha1 domain protein.
  
     0.544
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.