STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7511Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_2927 SARP family transcriptional regulator. (283 aa)    
Predicted Functional Partners:
Caci_3944
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2189 putative regulator protein.
  
     0.775
Caci_1234
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.
  
     0.774
Caci_6283
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: sgr:SGR_5285 putative AfsR-like transcriptional regulator.
  
  
 0.772
Caci_2780
Transcriptional regulator, XRE family; PFAM: NB-ARC domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.
  
    0.765
Caci_8120
PFAM: NB-ARC domain protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sma:SAV_3804 transcriptional regulator.
  
    0.762
Caci_1981
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2192 putative AfsR-like transcriptional regulator.
  
    0.744
Caci_1502
KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
     0.628
Caci_0264
SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 putative DNA-binding protein.
  
     0.627
Caci_6214
SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
     0.622
Caci_8469
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_6648 helix-turn-helix domain- containing protein.
  
     0.610
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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