STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7540Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_3686 MarR family transcriptional regulator. (165 aa)    
Predicted Functional Partners:
Caci_4763
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_5394 hypothetical protein.
 
   
 0.779
Caci_4616
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_3909 MarR family transcriptional regulator.
  
     0.772
Caci_1273
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO5413 MarR-transcriptional regulator.
  
   
 0.608
Caci_7539
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_3687 3-oxoacyl-[acyl-carrier- protein] reductase.
 
     0.593
Caci_1264
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_4273 MarR family transcriptional regulator.
  
     0.465
Caci_1821
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa43350 putative transcriptional regulator.
  
     0.463
Caci_1436
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_3810 integral membrane protein.
  
     0.421
Caci_5000
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mjl:Mjls_1182 MarR family transcriptional regulator.
  
     0.417
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.