STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7591KEGG: sma:SAV_5066 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Caci_2462
PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; KEGG: sgr:SGR_5738 putative prephenate dehydrogenase.
   
  
 0.874
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.849
Caci_7633
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbk:CLL_A3247 O-antigen export system ATP- binding protein RfbB.
   
    0.822
Caci_6784
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.820
Caci_1525
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sen:SACE_6041 integrase/recombinase; Belongs to the 'phage' integrase family.
  
    0.798
Caci_4624
PFAM: integrase family protein; KEGG: mmi:MMAR_1817 integrase/recombinase XerC; Belongs to the 'phage' integrase family.
  
    0.798
Caci_7714
KEGG: ace:Acel_0557 N-acetylglucosamine 6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
  
    0.774
Caci_8130
KEGG: sgr:SGR_4055 putative N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3.
  
    0.774
Caci_7077
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
 
  
 0.743
Caci_1524
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ace:Acel_1548 DNA protecting protein DprA.
 
 
 0.725
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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