STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7608PFAM: glycosyl transferase family 2; KEGG: sgr:SGR_4504 hypothetical protein. (1299 aa)    
Predicted Functional Partners:
Caci_7607
Hypothetical protein; KEGG: sgr:SGR_4505 putative secreted protein.
 
     0.958
Caci_9037
KEGG: sma:SAV_4300 hypothetical protein.
  
     0.714
whiB-6
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.571
Caci_7932
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: sco:SCO5200 hypothetical protein.
 
  
 0.523
Caci_7940
KEGG: sco:SCO5148 hypothetical protein.
  
     0.515
Caci_0343
KEGG: sgr:SGR_3221 hypothetical protein.
  
     0.510
Caci_7634
PFAM: ABC-2 type transporter; KEGG: sco:SCO6757 ABC transporter membrane component.
 
  
 0.489
Caci_0808
KEGG: sma:SAV_2707 hypothetical protein.
  
     0.481
Caci_0341
PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein.
  
    0.464
Caci_1473
KEGG: sco:SCO2947 hypothetical protein.
  
     0.449
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.