STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7634PFAM: ABC-2 type transporter; KEGG: sco:SCO6757 ABC transporter membrane component. (327 aa)    
Predicted Functional Partners:
Caci_7633
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbk:CLL_A3247 O-antigen export system ATP- binding protein RfbB.
 
 0.999
Caci_7632
PFAM: glycosyl transferase group 1; KEGG: cvi:CV_4120 glycosyltransferase.
 
  
 0.918
Caci_7635
PFAM: glycosyl transferase group 1; KEGG: saq:Sare_1689 glycosyl transferase group 1.
 
  
 0.720
Caci_3366
KEGG: fal:FRAAL3957 hypothetical protein.
  
  
 0.694
Caci_6001
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: sma:SAV_6092 serine/threonine protein kinase.
  
    0.633
Caci_0077
KEGG: sgr:SGR_3755 hypothetical protein.
     
 0.613
Caci_7648
PFAM: glycosyl transferase group 1; KEGG: mmp:MMP1080 glycosyl transferase, group 1.
 
  
 0.607
Caci_7649
PFAM: glycosyl transferase family 2; KEGG: sma:SAV_5031 glycosyl transferase.
 
   
 0.588
Caci_7630
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: saq:Sare_1683 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.582
Caci_7629
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sgr:SGR_4942 putative NAD-dependent dehydrogenase.
       0.562
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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