STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7644PFAM: glycosyl transferase group 1; KEGG: saq:Sare_1687 glycosyl transferase group 1. (545 aa)    
Predicted Functional Partners:
Caci_7643
Hypothetical protein; KEGG: saq:Sare_1685 glycosyl transferase group 1.
     0.943
Caci_7648
PFAM: glycosyl transferase group 1; KEGG: mmp:MMP1080 glycosyl transferase, group 1.
  
     0.767
Caci_7622
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sgr:SGR_4944 putative UDP-N-acetyl-D- mannosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.761
Caci_7629
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sgr:SGR_4942 putative NAD-dependent dehydrogenase.
 
    0.713
Caci_7632
PFAM: glycosyl transferase group 1; KEGG: cvi:CV_4120 glycosyltransferase.
  
     0.687
Caci_7646
Hypothetical protein; KEGG: saq:Sare_1685 glycosyl transferase group 1.
 
     0.658
Caci_7631
KEGG: aau:AAur_2679 putative acetyltransferase.
  
     0.633
Caci_7645
PFAM: protein of unknown function DUF820; KEGG: fra:Francci3_2128 hypothetical protein.
       0.536
Caci_3233
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.523
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.523
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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