STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7650KEGG: msm:MSMEG_2897 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Caci_7651
PFAM: thioesterase superfamily protein; KEGG: sco:SCO3049 acyl-CoA hydrolase.
       0.773
Caci_7924
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL3658 hypothetical protein.
  
     0.670
Caci_7652
KEGG: nph:NP1840A hypothetical protein.
       0.555
Caci_4650
PFAM: Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: aau:AAur_1122 putative NAD dependent epimerase/dehydratase family protein.
  
     0.540
Caci_3850
PFAM: Antibiotic biosynthesis monooxygenase; globin; KEGG: fal:FRAAL2473 hypothetical protein.
  
     0.526
Caci_1495
KEGG: mab:MAB_3111 hypothetical protein.
  
     0.525
Caci_7647
Hypothetical protein.
       0.465
Caci_7648
PFAM: glycosyl transferase group 1; KEGG: mmp:MMP1080 glycosyl transferase, group 1.
       0.465
Caci_7649
PFAM: glycosyl transferase family 2; KEGG: sma:SAV_5031 glycosyl transferase.
       0.465
Caci_7142
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fjo:Fjoh_3835 amine oxidase.
  
     0.463
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.