STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7726PFAM: aldo/keto reductase; KEGG: acr:Acry_2829 aldo/keto reductase. (347 aa)    
Predicted Functional Partners:
Caci_5354
PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1385 putative oxidoreductase.
  
     0.731
Caci_7727
PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_2401 acetyltransferase, GNAT family protein.
       0.566
Caci_7725
SMART: helix-turn-helix domain protein; KEGG: sma:SAV_3315 DNA-binding protein.
       0.558
Caci_1160
PFAM: aldo/keto reductase; KEGG: mab:MAB_1528c oxidoreductase.
 
 
0.436
Caci_7728
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: nca:Noca_1710 hypothetical protein; Belongs to the TPP enzyme family.
  
    0.435
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.