STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7793PFAM: aminoglycoside phosphotransferase; KEGG: fal:FRAAL3875 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Caci_8852
Amino acid/amide ABC transporter substrate- binding protein, HAAT family; KEGG: fra:Francci3_0852 hypothetical protein.
  
     0.704
Caci_8542
KEGG: fal:FRAAL5513 hypothetical protein.
  
     0.644
Caci_3347
Amino acid/amide ABC transporter substrate- binding protein, HAAT family; KEGG: fra:Francci3_0852 hypothetical protein.
  
     0.625
Caci_7792
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
    0.580
Caci_5670
KEGG: ace:Acel_1921 hypothetical protein.
  
     0.535
Caci_0558
KEGG: sco:SCO6025 hypothetical protein.
  
     0.509
Caci_4260
KEGG: ace:Acel_1921 hypothetical protein.
  
     0.495
Caci_2557
PFAM: regulatory protein TetR; KEGG: sco:SCO7815 TetR family transcriptional regulator.
  
     0.494
Caci_3440
TIGRFAM: chlorinating enzyme; PFAM: Phytanoyl-CoA dioxygenase; KEGG: bte:BTH_II0564 BarB2.
  
    0.472
Caci_4046
KEGG: fal:FRAAL2217 hypothetical protein.
  
     0.457
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.