STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7809PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein. (775 aa)    
Predicted Functional Partners:
Caci_7810
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_1654 ABC transporter related.
 
 
 0.962
Caci_7811
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: fre:Franean1_1653 histidine kinase.
 
     0.828
Caci_1614
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_1654 ABC transporter related.
 
 
 0.814
Caci_6965
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_1654 ABC transporter related.
 
 
 0.738
Caci_0681
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_1654 ABC transporter related.
 
 
 0.732
Caci_7812
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fre:Franean1_1652 two component LuxR family transcriptional regulator.
 
     0.633
Caci_0693
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
 
  
 0.629
Caci_1028
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_0086 hypothetical protein.
 
  
 0.629
Caci_7899
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3111 ABC transport system ATP-binding protein.
 
 
 0.628
Caci_0692
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_5430 ABC transporter ATP-binding protein.
 
 
 0.614
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (18%) [HD]