STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7838PFAM: peptidase C60 sortase A and B; KEGG: stp:Strop_3604 peptidase C60, sortase A and B. (946 aa)    
Predicted Functional Partners:
Caci_7837
Hypothetical protein.
       0.773
Caci_3575
KEGG: ace:Acel_0349 hypothetical protein.
 
     0.653
Caci_3979
KEGG: ace:Acel_0349 hypothetical protein.
 
     0.653
Caci_7839
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_6944 EmrB/QacA family drug resistance transporter.
       0.485
Caci_1491
KEGG: sgr:SGR_4624 hypothetical protein.
  
     0.478
Caci_7836
PFAM: alpha/beta hydrolase fold protein; KEGG: rso:RSc3346 putative lysophospholipase protein.
       0.407
Caci_8249
KEGG: sgr:SGR_3964 hypothetical protein.
  
     0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.