STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7844PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO1335 oxidoreductase. (245 aa)    
Predicted Functional Partners:
Caci_2287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.764
Caci_2182
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.755
Caci_1079
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_3239 short-chain dehydrogenase/reductase SDR.
  
     0.632
Caci_7845
PFAM: phosphoesterase PA-phosphatase related; KEGG: det:DET1390 PAP2 family protein.
   
   0.584
Caci_5627
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL2907 putative short chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.538
Caci_2587
TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.
 
 
 0.451
Caci_6809
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nca:Noca_1990 (acyl-carrier-protein) S- malonyltransferase.
  
 
 0.433
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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