STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7854PFAM: protein of unknown function DUF1508; KEGG: tde:TDE0826 hypothetical protein. (101 aa)    
Predicted Functional Partners:
Caci_4392
KEGG: sco:SCO4244 hypothetical protein.
   
 
 0.944
Caci_4383
PFAM: tail sheath protein; KEGG: sco:SCO4253 hypothetical protein.
   
 
 0.943
Caci_4391
PFAM: GPW/gp25 family protein; KEGG: sco:SCO4245 hypothetical protein.
   
   0.935
Caci_1891
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sgr:SGR_478 hypothetical protein.
  
   0.854
Caci_4389
PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCO4247 hypothetical protein.
  
   0.854
Caci_8593
PFAM: Peptidoglycan-binding LysM; KEGG: fre:Franean1_2587 response regulator receiver/SARP domain-containing protein.
  
   0.854
Caci_4252
Hypothetical protein.
   
 
 0.838
Caci_4388
TIGRFAM: conserved hypothetical protein; KEGG: sco:SCO4248 hypothetical protein.
   
 
 0.838
Caci_8747
PFAM: Peptidoglycan-binding LysM; KEGG: fra:Francci3_0409 peptidoglycan-binding LysM.
 
   0.834
Caci_2545
KEGG: fal:FRAAL2242 putative signal peptide.
  
  
 0.530
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.