STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7910PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0076 ABC-type branched-chain amino acid transport systems ATPase component. (275 aa)    
Predicted Functional Partners:
Caci_7911
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0075 ABC-type branched-chain amino acid transport systems ATPase component.
  
0.984
Caci_3319
PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.982
Caci_7909
PFAM: inner-membrane translocator; KEGG: tfu:Tfu_0077 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.974
Caci_3350
PFAM: inner-membrane translocator; KEGG: sma:SAV_7582 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.972
Caci_7908
PFAM: inner-membrane translocator; KEGG: tfu:Tfu_0078 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.971
Caci_8833
PFAM: inner-membrane translocator; KEGG: fre:Franean1_5664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.965
Caci_7912
PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_0074 ABC branched-chain amino acid transporter substrate-binding protein.
 
  
 0.962
Caci_8309
PFAM: inner-membrane translocator; KEGG: nca:Noca_4017 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.958
Caci_8310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_4016 ABC transporter related.
  
0.950
Caci_8832
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_0854 ABC transporter related.
  
0.939
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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