STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7919Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; regulatory protein GntR HTH; SMART: regulatory protein DeoR; KEGG: sen:SACE_0763 DeoR family transcriptional regulator. (267 aa)    
Predicted Functional Partners:
Caci_7918
Alpha-galactosidase; KEGG: sma:SAV_628 secreted alpha-galactosidase; PFAM: Ricin B lectin; glycoside hydrolase clan GH- D; SMART: Ricin B lectin.
       0.778
Caci_5907
1-phosphofructokinase; KEGG: sen:SACE_6317 tagatose-6-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.669
Caci_5272
1-phosphofructokinase; KEGG: fre:Franean1_7074 ribokinase-like domain- containing protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.617
Caci_7917
KEGG: sma:SAV_5910 hypothetical protein.
       0.553
Caci_7921
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3380 binding-protein-dependent transport systems inner membrane component.
       0.508
Caci_7916
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2343 3-hydroxybutyrate dehydrogenase.
  
    0.501
Caci_7922
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein.
       0.474
Caci_7920
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1078 ABC transporter integral membrane permease.
       0.466
Caci_7915
Putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: saq:Sare_1796 transcriptional regulator, CdaR.
       0.409
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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