STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7920PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1078 ABC transporter integral membrane permease. (303 aa)    
Predicted Functional Partners:
Caci_7922
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein.
 
 
 0.960
Caci_7921
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3380 binding-protein-dependent transport systems inner membrane component.
 
   0.959
Caci_2623
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0870 binding-protein-dependent transport systems inner membrane component.
 
 0.796
Caci_4696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0539 sugar transporter membrane protein.
 
 
 0.791
Caci_8465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7012 binding protein dependent transport protein.
 
 
 0.791
Caci_1598
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
 
 
 0.790
Caci_4319
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2918 ABC-type sugar transport system, permease component.
 
 0.787
Caci_7515
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0481 binding-protein-dependent transport systems inner membrane component.
 
 
 0.774
Caci_3807
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
 
 0.753
Caci_3702
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7012 binding protein dependent transport protein.
 
 
 0.752
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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