STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7952TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sen:SACE_7163 HAD family hydrolase. (206 aa)    
Predicted Functional Partners:
Caci_1632
KEGG: fra:Francci3_1316 hypothetical protein.
  
  
 0.759
Caci_7951
KEGG: sgr:SGR_2387 hypothetical protein.
       0.714
Caci_7950
2,3,4,5-tetrahydropyridine-2, 6-dicarboxylateN-succinyltransferase; KEGG: tfu:Tfu_0494 2,3,4,5-tetrahydropyridine-2- carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.525
Caci_2645
PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase; Belongs to the glycosyl hydrolase 18 family.
  
     0.516
Caci_7949
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_0495 dipeptidase.
  
    0.500
Caci_7953
Hypothetical protein; KEGG: GG17156 gene product from transcript GG17156- RA.
       0.458
Caci_1146
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_1383 hydrolase.
  
     0.444
Caci_0414
Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: sma:SAV_775 TetR family transcriptional regulator.
  
     0.404
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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