STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8053TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: sma:SAV_4835 electron transfer oxidoreductase. (423 aa)    
Predicted Functional Partners:
Caci_3384
KEGG: aau:AAur_3560 hypothetical protein.
   
  
 0.618
Caci_1297
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: tfu:Tfu_0593 electron transfer flavoprotein, beta subunit.
  
 
 0.530
Caci_2472
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nca:Noca_1815 electron transfer flavoprotein beta-subunit.
  
 
 0.530
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
 0.504
Caci_2103
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sgr:SGR_471 methyltransferase.
  
  
 0.501
Caci_2104
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: mgi:Mflv_3991 chalcone/stilbene synthase domain-containing protein.
  
  
 0.499
Caci_7736
TIGRFAM: anti-sigma factor; KEGG: sma:SAV_3037 anti-sigma factor.
  
    0.481
Caci_7605
KEGG: sgr:SGR_4507 hypothetical protein.
  
     0.464
Caci_6039
KEGG: sco:SCO1850 chelatase; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; AAA ATPase.
  
  
 0.462
Caci_0166
PFAM: regulatory protein TetR; KEGG: sgr:SGR_4377 TetR family transcriptional regulator.
  
     0.452
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.