STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8096PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_3908 hydrolase. (205 aa)    
Predicted Functional Partners:
Caci_5572
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fal:FRAAL2902 hypothetical protein.
     
  0.900
Caci_7316
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_2888 haloacid dehalogenase-like hydrolase.
     
  0.900
Caci_8965
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saq:Sare_3192 hydrolase.
     
  0.900
Caci_4914
PFAM: ExsB family protein; KEGG: fre:Franean1_0147 ExsB family protein.
 
      0.899
Caci_2483
PFAM: FAD linked oxidase domain protein; KEGG: sen:SACE_4261 (S)-2-hydroxy-acid oxidase, subunit D.
    
 0.671
Caci_5973
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: sen:SACE_6366 glycolate oxidase subunit.
    
 0.671
Caci_5974
PFAM: FAD linked oxidase domain protein; KEGG: rxy:Rxyl_2832 FAD linked oxidase-like protein.
    
 0.671
Caci_2484
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sen:SACE_4263 glycolate oxidase, iron-sulfur subunit.
    
 0.663
Caci_5969
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rxy:Rxyl_2831 protein of unknown function DUF224, cysteine-rich region.
    
 0.663
Caci_8097
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ace:Acel_0104 cold-shock DNA-binding protein family protein.
       0.607
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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