STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8148PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_6794 putative oxidoreductase. (557 aa)    
Predicted Functional Partners:
Caci_6667
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ace:Acel_1694 squalene/phytoene synthase.
  
  
 0.708
Caci_6668
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: sen:SACE_4331 squalene/phytoene synthase.
  
  
 0.708
Caci_6039
KEGG: sco:SCO1850 chelatase; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; AAA ATPase.
  
  
 0.616
Caci_8149
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: afw:Anae109_3547 TPR repeat-containing protein.
   
   0.572
Caci_7363
KEGG: tfu:Tfu_0824 hypothetical protein.
      
 0.420
Caci_6126
Cobaltochelatase, CobN subunit; KEGG: sco:SCO1849 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase.
  
  
 0.415
Caci_4211
KEGG: sco:SCO3729 regulatory protein.
  
     0.403
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.