STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8154PFAM: beta-lactamase; KEGG: rha:RHA1_ro05862 hypothetical protein. (550 aa)    
Predicted Functional Partners:
Caci_3468
PFAM: beta-lactamase; KEGG: kra:Krad_0368 serine-type D-Ala-D-Ala carboxypeptidase.
  
   
 0.755
Caci_2188
PFAM: beta-lactamase; KEGG: rha:RHA1_ro06731 beta-lactamase.
  
   
 0.754
Caci_8711
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: sgr:SGR_6869 putative beta-lactamase.
  
   
 0.737
Caci_0459
PFAM: beta-lactamase; KEGG: mmi:MMAR_0696 lipoprotein, LpqK.
  
   
 0.734
Caci_1611
PFAM: beta-lactamase; KEGG: sgr:SGR_3563 putative beta-lactamase.
  
   
 0.658
Caci_8799
PFAM: beta-lactamase; KEGG: mbb:BCG_1769c putative penicillin-binding protein.
  
     0.522
Caci_8155
PFAM: PHP domain protein; KEGG: cth:Cthe_0724 HisJ family histidinol phosphate phosphatase; Belongs to the PHP hydrolase family. HisK subfamily.
       0.518
Caci_5550
PFAM: beta-lactamase; KEGG: rha:RHA1_ro02594 lactone hydrolase.
  
     0.507
Caci_1266
PFAM: beta-lactamase; KEGG: hma:rrnAC1970 hypothetical protein.
  
     0.478
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.