STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8187PFAM: glycosyl transferase family 2; KEGG: lxx:Lxx05130 dolichyl-phosphate mannose synthase. (233 aa)    
Predicted Functional Partners:
Caci_8188
KEGG: art:Arth_2682 hypothetical protein.
 
   
 0.951
Caci_8186
PFAM: glycosyl transferase family 2; KEGG: art:Arth_2683 glycosyl transferase, family 2.
 
  
 0.836
Caci_5581
PFAM: glycosyl transferase family 2; KEGG: nca:Noca_2994 glycosyl transferase family protein.
 
     0.676
Caci_8170
PFAM: glycosyl transferase family 2; KEGG: nca:Noca_2994 glycosyl transferase family protein.
 
     0.629
Caci_8185
PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0633 glycosyl transferase, group 2 family protein.
 
  
 0.615
Caci_8179
PFAM: glycosyl transferase family 2; KEGG: art:Arth_2683 glycosyl transferase, family 2.
 
     0.530
Caci_8189
KEGG: cef:CE0352 hypothetical protein.
  
  
 0.527
Caci_7633
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbk:CLL_A3247 O-antigen export system ATP- binding protein RfbB.
 
  
 0.512
Caci_3686
PFAM: glycosyl transferase family 2; KEGG: sen:SACE_6097 putative glycosyl transferase.
  
     0.506
Caci_8842
PFAM: glycosyl transferase family 2; KEGG: sco:SCO4875 sugar transferase.
 
     0.415
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.