STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8207PFAM: TadE family protein; KEGG: sco:SCO4530 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Caci_8209
KEGG: sco:SCO4532 hypothetical protein.
       0.795
Caci_8208
PFAM: TadE family protein; KEGG: sco:SCO4531 septum determining protein.
       0.783
Caci_8206
Hypothetical protein; KEGG: GF22328 gene product from transcript GF22328- RA.
       0.773
Caci_8210
Hypothetical protein; KEGG: sco:SCO4548 integral membrane protein.
       0.712
Caci_8205
PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein.
  
  
 0.703
Caci_8204
PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein.
  
  
 0.686
Caci_8203
PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase.
  
  
 0.661
Caci_8212
KEGG: nca:Noca_1538 hypothetical protein.
       0.614
Caci_8211
KEGG: cotA; spore coat protein sp96.
       0.583
Caci_8745
KEGG: saq:Sare_4971 hypothetical protein.
  
  
 0.578
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.