STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8226PFAM: Peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease. (575 aa)    
Predicted Functional Partners:
Caci_0446
KEGG: bac:BamMC406_0814 peptidase S8 and S53 subtilisin kexin sedolisin.
  
     0.774
Caci_2539
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.773
Caci_6111
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.773
Caci_1999
Protease-like protein; KEGG: bmn:BMA10247_2032 putative lipoprotein.
  
     0.772
Caci_7461
PFAM: Ig family protein; peptidase S8 and S53 subtilisin kexin sedolisin; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: dac:Daci_3662 Ig family protein.
  
     0.771
Caci_7483
PFAM: phosphoesterase; KEGG: cjk:jk0010 putative acid phosphatase.
  
     0.643
Caci_8225
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein.
       0.594
Caci_7156
Glucan 1,4-alpha-glucosidase; PFAM: Glucodextranase N; glycoside hydrolase 15- related; KEGG: bid:Bind_3431 glucan 1,4-alpha-glucosidase.
  
     0.518
Caci_6434
PFAM: Chloride channel core; CBS domain containing protein; KEGG: sco:SCO6320 transport integral membrane protein.
  
     0.491
Caci_0883
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: ton:TON_1355 subtilisin-like serine protease precursor.
  
     0.485
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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