STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8250Hypothetical protein; KEGG: kpe:KPK_3638 DNA translocase FtsK. (390 aa)    
Predicted Functional Partners:
Caci_8249
KEGG: sgr:SGR_3964 hypothetical protein.
       0.773
Caci_8251
PFAM: thiamineS protein; KEGG: sgr:SGR_3962 putative molybdopterin converting factor.
       0.608
Caci_8252
Hypothetical protein; KEGG: sco:SCO4160 hydrolase.
       0.608
Caci_8247
Putative transmembrane anti-sigma factor; KEGG: nca:Noca_1677 hypothetical protein.
       0.458
Caci_8248
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ace:Acel_0057 RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.
       0.458
Caci_8253
Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: sco:SCO4159 transcriptional regulatory protein.
       0.434
mshD
Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
       0.434
Caci_8255
KEGG: nfa:nfa19480 hypothetical protein.
       0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.