STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8283KEGG: sco:SCO3744 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Caci_8284
KEGG: sma:SAV_4572 hypothetical protein.
     0.994
Caci_8285
PFAM: glycosyl transferase family 2; KEGG: sco:SCO3742 glycosyltransferase.
 
     0.952
Caci_8287
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sco:SCO3740 histidine kinase.
 
     0.843
Caci_4330
PFAM: oxidoreductase molybdopterin binding; KEGG: msm:MSMEG_0998 oxidoreductase, molybdopterin binding.
 
     0.839
Caci_0708
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sco:SCO3739 epimerase.
 
     0.838
Caci_8282
KEGG: eli:ELI_05545 hypothetical protein.
       0.689
Caci_8286
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO3741 response regulator.
 
     0.567
Caci_8281
Hypothetical protein; KEGG: nfa:nfa18100 putative transcriptional regulator.
       0.462
Caci_4347
PFAM: regulatory protein TetR; KEGG: kra:Krad_2116 TetR family transcriptional regulator.
  
     0.452
Caci_7134
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sco:SCO0512 regulatory protein.
  
     0.437
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.