STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8331KEGG: sgr:SGR_4150 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Caci_8330
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_4735 ECF subfamily RNA polymerase sigma factor.
 
 
   0.987
Caci_1250
KEGG: sgr:SGR_2141 putative cellulose-binding protein.
 
    0.555
Caci_7883
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sgr:SGR_1785 hypothetical protein.
  
     0.482
Caci_7764
PFAM: MaoC domain protein dehydratase; KEGG: fre:Franean1_4032 dehydratase.
  
    0.468
Caci_8329
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_4736 3-phosphoserine phosphatase.
       0.465
Caci_2688
KEGG: rha:RHA1_ro04243 hypothetical protein.
  
     0.459
Caci_0054
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_4604 morphological differentiation- associated protein.
 
     0.435
Caci_8476
PFAM: protein of unknown function DUF690; KEGG: stp:Strop_1440 hypothetical protein.
  
 
   0.413
Caci_6132
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_3904 hypothetical protein.
 
 
   0.412
Caci_7885
PFAM: protein of unknown function DUF690; KEGG: sma:SAV_2541 hypothetical protein.
  
 
   0.403
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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