STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8480KEGG: nca:Noca_0306 hypothetical protein; Belongs to the WXG100 family. (96 aa)    
Predicted Functional Partners:
Caci_8483
Hypothetical protein; KEGG: predicted gene, 100041170.
  
   0.625
Caci_8485
KEGG: saq:Sare_0934 hypothetical protein.
       0.602
Caci_8481
Hypothetical protein.
       0.592
Caci_8482
Hypothetical protein; KEGG: met:M446_5135 flagellin domain-containing protein.
       0.592
Caci_8484
Hypothetical protein.
       0.592
Caci_8486
Hypothetical protein; KEGG: rso:RSc2976 penicillin-binding 1 transmembrane protein.
       0.592
Caci_8479
KEGG: saq:Sare_4832 hypothetical protein; Belongs to the WXG100 family.
       0.526
Caci_8487
KEGG: fal:FRAAL0278 hypothetical protein.
  
    0.504
Caci_8488
KEGG: sen:SACE_5460 hypothetical protein.
  
    0.487
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.