STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8535PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rxy:Rxyl_2705 monooxygenase, FAD-binding protein. (384 aa)    
Predicted Functional Partners:
Caci_8534
PFAM: regulatory protein TetR; KEGG: scl:sce7880 TetR family transcriptional regulator.
       0.773
Caci_5187
PFAM: monooxygenase FAD-binding; KEGG: sgr:SGR_1531 putative monooxygenase.
  
     0.729
Caci_7249
PFAM: monooxygenase FAD-binding; KEGG: fal:FRAAL0529 putative oxidoreductase (partial match).
  
     0.692
Caci_6278
PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro03279 oxidoreductase.
  
     0.612
Caci_6461
PFAM: monooxygenase FAD-binding; KEGG: vei:Veis_3440 monooxygenase, FAD-binding.
  
     0.575
Caci_5384
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL2565 putative polyketide oxygenase/hydroxylase.
  
     0.530
Caci_3345
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nfa:nfa32760 putative monooxygenase.
  
     0.529
Caci_1083
PFAM: monooxygenase FAD-binding; KEGG: sma:SAV_2835 polyketide hydroxylase.
  
     0.515
Caci_8533
PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein.
       0.459
Caci_3551
PFAM: monooxygenase FAD-binding; KEGG: tfu:Tfu_1223 putative rifampin monooxygenase.
  
     0.447
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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