STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8589Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: stp:Strop_3359 helix-turn-helix domain- containing protein. (402 aa)    
Predicted Functional Partners:
Caci_8590
PFAM: flavoprotein; KEGG: tfu:Tfu_0396 hypothetical protein.
 
    0.889
Caci_3240
Transcriptional regulator, XRE family; KEGG: sgr:SGR_4257 putative DNA-binding protein.
  
     0.733
Caci_8469
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_6648 helix-turn-helix domain- containing protein.
  
     0.676
Caci_0264
SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 putative DNA-binding protein.
  
     0.653
Caci_6883
KEGG: fre:Franean1_6151 putative transcriptional regulator.
  
     0.643
Caci_0365
PFAM: protein of unknown function DUF742; KEGG: sco:SCO6796 hypothetical protein.
  
     0.621
Caci_4239
Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sma:SAV_7503 membrane translocator.
  
 
   0.618
Caci_6747
PFAM: protein of unknown function DUF574; KEGG: sco:SCO0929 hypothetical protein.
  
     0.597
Caci_4750
PFAM: protein of unknown function DUF574; KEGG: sma:SAV_4789 hypothetical protein.
  
     0.588
Caci_6214
SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
     0.583
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.