STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8631PFAM: Peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease. (648 aa)    
Predicted Functional Partners:
Caci_2539
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.771
Caci_7461
PFAM: Ig family protein; peptidase S8 and S53 subtilisin kexin sedolisin; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: dac:Daci_3662 Ig family protein.
  
     0.769
Caci_7483
PFAM: phosphoesterase; KEGG: cjk:jk0010 putative acid phosphatase.
  
     0.635
Caci_4189
KEGG: fal:FRAAL2307 hypothetical protein.
  
     0.498
Caci_8632
Hypothetical protein.
       0.476
Caci_6434
PFAM: Chloride channel core; CBS domain containing protein; KEGG: sco:SCO6320 transport integral membrane protein.
  
     0.468
Caci_8051
SMART: Pyrrolo-quinoline quinone; KEGG: ace:Acel_0402 pyrrolo-quinoline quinone.
  
     0.456
Caci_8898
PFAM: protein of unknown function DUF347; KEGG: afe:Lferr_1967 protein of unknown function DUF347.
  
     0.415
Caci_2697
PFAM: legume lectin beta domain; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.406
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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